NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1002994

Scaffold Ga0272432_1002994


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1002994 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19137
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (20.83%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005901Metagenome386Y
F024448Metagenome205Y
F087979Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_100299421F024448N/AMKDVLISSTMSMSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIKLLTLIKVKLIQEFDDHYAKKLITHAIYLNLTVQDHTIDTASMLITQLNQYQMILEKTXMNKIDLVIDMRINSLRFSNFNPTSQKSIALFSSNKSITKRKSLTSTHILKRSFTFVTSQIS
Ga0272432_100299422F005901N/AVISRLEDNAAEHIFAXCQHDASHSYISIDELFEHLEEIYNELNKNRKCHHEYNALRQANKSFNVFYFNFMKLFSYLEYDDHTLMNDLQNKINNRLQNALSVCSKNFTSLTRLRIFLQDVNSKQRVNYQLRSERRTVIVKVTVISDKRATTFLSAMMTLIINYVKSIIFSISESDRAKLSIICYICKTLKHLFQNCSQNKINIFASHAFTLRLHEIVISKNKENEKISFKNSEAKN
Ga0272432_100299424F087979N/AMKEKNESSTFIYMNXAESRLNSSFNDLRLQKFTHMTEMIKTELLKLN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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