NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1003380

Scaffold Ga0272432_1003380


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1003380 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17650
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (92.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008598Metagenome330Y
F042663Metagenome157Y
F058564Metagenome134Y
F074201Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_100338018F008598GGCGGMAHLHADDTTDDALPAHVTLTTDHVTADAAGPLAAALHTVGVTVERHTFLPVRGEEQHPSGVLLLAASGPLLPLARLVVPATAPAGVAPALAGALGIGERPVPATLQLKADGVFVSVRSRDLIDITQALDALPAQLTRLDMRREERRLVYNEGAWRIDP
Ga0272432_10033803F042663AGGAMTPQAIPAPHIAASIPSIPPRTAIALDDGDVSVTATFRPRDPIGATEVVASLALPDDAALLNLLDATITRLIAYRDAYQQAMDADPAPVRAPLPLPVPWYAW
Ga0272432_10033806F058564AGGAGGMTPSGYILYGHPLCVPCFDGDYHLTADGLAHAHDGQGRAADVAPIHAGDPDDGAPCAGCGQPLAAPPEAGIVWTCPSCGGDDLRVLYDERRACRVTTLNDTGDPADAAPWPSYAGDEFVDIDPGSFAFHCDACNTHDITPRKGGRINDLGHQQAA
Ga0272432_10033808F074201AGGAGGMNTVDITPTPEACRQIARLFRVQQADAEALAVRAARALDDLDGCADVDLAPWDRALLAAAFAALSEAEDARAVKMREGLEALGPYADADDGEGSDDAP
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