NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1003661

Scaffold Ga0272432_1003661


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1003661 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16646
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (26.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F002432Metagenome559Y
F003820Metagenome466Y
F104132Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0272432_100366111F003820N/AMKLFSYLDYDDCTLMNDLQNKINNRVQNALSVCSESFTSLSHLKKFLQDVNNKQRVNYQLRSERCTVIIKVTAVSDKCITSLSVMTLIINYVKSIIFSIFESDQAKSSIICYICKTLDYLFKNCSQLNKINTSASHAFISRLHEIIILKNKENEKMSFENSETKN
Ga0272432_100366114F104132AGAAGMNEILNFRVKNSQLEYLIKWTGIEENSWVKFANVMNVIEVMNAYHVRNPDRSGKNSXIAYVQESSDSEYESEN
Ga0272432_10036614F000597N/AMKDVLISSTTSRSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYLNLTVQDHTIDTASMLITRLD
Ga0272432_10036618F002432N/AMTLFYFNKEFHSRMSFDSDMTDYKTTCERLEVRKADDIVIQMKELLNFNRQQLKKTKLIIEVQINKHRXNVIYEVDDXVXLSFRNVKTTRLCKDLKDKQLDLYQITVKVSIFYHLHLSVSMKHLHSMFSSKLLRSCSEDSLSKQHSESLRSITIKDDEHXEIDDILNFRCYQDQIQYKVKXTDLDKDNEXYYVDKEKFNDSEKVLNEFHKLYSNKSR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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