NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1005119

Scaffold Ga0272432_1005119


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1005119 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13321
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (10.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F021896Metagenome216Y
F055319Metagenome138Y
F089602Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_100511913F055319N/AMKRLKLVDKMICIQISERNLAQKLNFSCKQQDFFIYIDDIIVVNVHDMQSKELL
Ga0272432_100511916F089602N/AMKDEXSSFIKISSEKDDNLSEIIDITLQTVNQREIFHQRIFFLLIEEIVIVNKVIHVLLQNFTKI
Ga0272432_100511917F008735N/AMKEIMIIVHIHALYQTLLSCIQSIFVLLIFRYVKKFLESKSNEDNDRICKKMNNKRKLIIQDLCNDLSYYHKKLRIQLYIDXRTENDEQRXNDNIMLSNLILKLLHCTKDLNXIFNHTLSELFDSTLIINQKIVKXLHLSKRVTRXDFNIXKRCRKCRSFIMSKTELN
Ga0272432_10051198F021896N/AMMKNNLESEDFLKNVECNLTFLKSDKEYIFSDETSERNSYFTIVIDESFIKVREI
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