NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1007958

Scaffold Ga0272432_1007958


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1007958 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9902
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F038009Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_10079581F008735N/AVSLLIYDESXLDIDDLDSMKEVMIIIHVHALYQTLLSCIQLIFVSLILKYVKKLLESKSNEDSDRICREMNDKRRLIIQDLCDDLSYCCKKLRIELYIDXRIENDEXEXNDDIMLSNLILKLLHYAKDLNXIFDHTLSELFNSTLIVNQKIVRXLHLSEKITERDFNIXKRCRKCRSFIMSETELN
Ga0272432_10079584F038009N/AMIKASSFQLNYVKLYKKSIELICLKDNRSSKEERILTLNFXXVFFLSDLKNTTRSFLFQMKDKTEQDLFLVNELSINXLLISKREIILLFVSRRETELLLASELRTELLLVSELKTELLLLSEXETKLLLASKLKTELLFSSEXKIKLLLASELSAELLLVSNL
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