NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1008483

Scaffold Ga0272432_1008483


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1008483 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9466
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023763Metagenome208Y
F038009Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_10084837F038009N/ALIELICLKNNRNFKEERILTLDFXXVFFLNDLKNMTRSFLFHMRNKIEXDLFLVNELNISXLLINKQEIILLLVSRXEIELLLASELRTELLLVSELKTELLLSSKXETKLLLASELKTELLLSSEXKTRLLFASELKTELLLSSEXKTKLLLVNDL
Ga0272432_10084839F023763N/AMSFQNCLMLILMLRIECISLLKKIFXATCQSIQLIINLVEMISDVIVESRQKLTSTSLMTTQLLSXHEIFKIFMIYDHLDRINKVFKLXSSFLESANNDHKFFIIDLVVTLDXVMLLQKVSDXMKNLILIVLRKNVFEYIVQSINFYHNLMIXIIMMKNNLESEDFLKNVECNLTFLKSDKEYIFSDETSKRDSYFTIVINESFIEVREI
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