NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1008550

Scaffold Ga0272432_1008550


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1008550 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9414
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009580Metagenome315Y
F074204Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_10085506F074204N/AMIVFCILRQAQSRVLALALIDSEVSAYVFMNKFFAQQHHLFLHQLTHSCRLXEFDDQVALIDDMTHVVEITMILDEHIERLFFYVIELSQYLIAMSLS
Ga0272432_10085507F009580AGCAGMIEVRVKRLRLVDKMICIQISERDLAQRLNFSCEQRDFFIYTDDITVVDVHDMQSEELLIXAFFSDFARMLQLAVVAQLSLVADFLDLRNDQNLILNDDNDEA

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