NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1008986

Scaffold Ga0272432_1008986


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1008986 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9086
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F038008Metagenome166Y
F064254Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_10089864F064254N/AMQELYEFISFLFSLYFIXFFNDITAXNXFSMLIESNIXMIIVAALMISKSFFKFMIFSSYYIAFHSIFHLRHVNKMCLINIXSLSHLHIIIATSSTHLSCRNXLKSIFLMYNCVNNALXDFAXFLCSHRCRCIIFDVKYXKXAALNLSFQTILYVYLICFCMSINLVITSMHXCSVSNKDKSCTSLIILFIASFSSTSACLITQCNFSVTS
Ga0272432_10089865F038008N/AMKXNHLYMMILXSESSKIVIVTNKKMSISQHHFNTFTLKQRVYLNNNDSKENVMMIAMRINXELNKRLKESTLVITHHEELKELIARMKHFADVVTKNQKCHENIYKVYSDSQTSLKTVKAIISTKDQTCLQ
Ga0272432_10089867F001951N/AMTITKFKFIDSLRNEKERNEDTVETTVTEMMIFELKKLLINAKMFLTLMNETMTKMKQD
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