NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1012166

Scaffold Ga0272432_1012166


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1012166 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7350
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F021026Metagenome220Y
F038009Metagenome166Y
F064254Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_101216610F021026N/AMQQHHLLLHQLIHSHRLXEFDDQVALIDDIIHVVEITMILDEHIKKLFLYVIELSQYLIIMSLSXLHHHVIDVNFEHNILILSFLFCLNHCCQFFVKIYDFNQQVENFSLEVNKVAFSQSRSQYAHKKQLSSXIIHKKQFSLQIIHKKQFSLQIIHKKQFSIQFAHKK
Ga0272432_101216611F038009N/AMKSMIKASSSQLNYVKLYKRLIELICLKNSRSSKEERILTLDFXXIFFLNDLKNTIKSFLFQMRNKIERNLFLMNELSINXLFMSKXKIILLLVSRXKTELLLASKLKIELLFVSELKTELLLSSKXRTRLLLVSELNAELFLVNDL
Ga0272432_10121662F064254N/AMQELYEFVSSLFSLSFIXFFNDIIAXNXFSMLIESIIQMIIVAALMISKSFLKFVMFSSHCITFHFTFHLKHVNRTCLIDIQSLSHSHVVIAILNTHLSCRNXLKSIFLVHNCINNALXDFAXFLCSCRYRCVIFDIRYQKXAALNLSFQTILHAYLICFCMSVNLVITSMRXCLLXICIKQIIXVYSN
Ga0272432_10121667F008735N/AMREITIIVHVHVLYQTLLSCNQSIFVLLILRYVKKLLESRSNEDSDRVCKRMNDKKRLIVQDLCNDLSYHHKRLRIQFYINXRTENDEXRXNDNIMLSNLILKLLHCTKDLDXIFDYTLNELFNSMLIVN
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