NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1020739

Scaffold Ga0272432_1020739


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1020739 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4986
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F009580Metagenome315Y
F021026Metagenome220Y
F038009Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_10207391F001951N/AMTKLRFIDSSRNERERDEDTVETTVTEVIIFEFKELLVDAEMLLTLTNEMMMKMKQDXXCLSCXSS
Ga0272432_10207392F009580AGCAGMIEVRVKRLRLVDKMICIQISERDLAQRLNFSCEQRDFFIYIDDVTVVDVHDMQSEELLIXAFFSNFAXMLQLAIVAQLSLVADFLDLRNDQNLILNDDNDEA
Ga0272432_10207393F021026N/AMIVFCILRQAQSKVLTLALIDSEVSAYVFMNKFFAQQHHLFLHQLIHSRRLREFDDQVALIDDIIHVVEITMILDEHIERLFFYVTELSQYFIVMSLSXLRRHVIDVNFEHNILILSFFFCLNHCCSFLVKIYDLNQQEENFSFKVNKVAFFQSCSQFTHKKQLSSRITHKKQFSLQITHKKQFSLQITHKKQFSTQFACKKQSSFSFAXKK
Ga0272432_10207394F038009N/AMSSMIKASSSQLDYVKLYKRSIELICSRNNRSSREKRISTLDFXXIFFLNDLKNTIRSFLFQTRDKTERDLFLVNELSISXLLVSKREIILLLVSRRKTELLFASELRTELLLVSELKTELLLSSEXETRLLLASELKTELLLSSEXETRLLLASELSAELLLVSDL
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