NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1041396

Scaffold Ga0272432_1041396


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1041396 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2920
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F008735Metagenome328Y
F021026Metagenome220Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_10413961F021026N/ALKLFEFDSTFKDNHMIIFCILRQAQSKVFALVLIDSEVFAYVFMNKFFAQQHHFLLHQLIHSCRLQEFDDQVSLINDITHVIEITMILNEYIEKLFFYVTELNQYFIIMSLSXLHHHVIDVNFKHNILILSFFFCLNHCCSFLIKIYDLNQ
Ga0272432_10413962F001951N/AMIMMKLKFIDSLRNEKERDEDTVETTVTEMMIFESQELLVNTEMFLTLMNETMMKMK
Ga0272432_10413964F008735N/AVSLLIYDESXLDINDLDSMREITIIIHIHALYQTLLSCIQLIFVLLIFRYVEKLLEFKSDEDSNRVCKKVNDKKRFIIQDLCNDLNYHCKRLRIQLYINXRIENDEXKXNDNIMLSNLILKLTHYVKDLNXIFNHTLSKLFDNMLIINQEIVKXLHLSGRITRRDFNVXKRCRKCKSFIMSKIELN
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