NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1177254

Scaffold Ga0272432_1177254


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1177254 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)884
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034417Metagenome174Y
F058564Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_11772541F058564N/ATHDGQPVEINVTPIHAGDPDDGAPCAGCGQPLTAPPEAAIVWTCPACGSADLRVLYDERRACRVTTLTDTGDGADAAPWPSYTGDELVDIDPGSFAFHCDACNSHDITPRKGGAINDLGHRQAA
Ga0272432_11772542F034417AGGAGGMTWAIVKPHNAWVRQAKEAWAALEPQAPQGSQLRDLAAIDHHRFALLIEALCALTSGQVSQDLQDLAGVRPVGEVLGMPDRGDTRLDTGDAGDW
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