NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1212060

Scaffold Ga0272432_1212060


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1212060 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)752
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018487Metagenome234Y
F061398Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_12120601F061398N/AMKQNEVILNAGEAFLMIEFTETIVQNREASVKSEFNHVMMSATFFMNLIQKKEKKQKKIEVFLISMINIEKALTSQKKTDLRTILFDHYHEFLNVFDHTMTEKLPPLREEGTDHQIEL
Ga0272432_12120602F018487GAGMNSAPFTMSTLVNKKLYAHILYNTECLFYKIITSHFARNYNLQCMKIRSHTITEFDEPSNSSVNEVAVIQIDINKHQKSRAFFYIVFKIASYNLILDLL
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