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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031471 Open in IMG/M |
| Scaffold ID | Ga0272439_1000151 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 145950 |
| Total Scaffold Genes | 160 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 73 (45.62%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F003820 | Metagenome | 466 | Y |
| F017767 | Metagenome | 238 | Y |
| F025887 | Metagenome | 199 | Y |
| F032102 | Metagenome | 180 | Y |
| F036036 | Metagenome | 170 | Y |
| F044226 | Metagenome | 154 | Y |
| F059497 | Metagenome | 133 | Y |
| F065269 | Metagenome | 127 | Y |
| F079402 | Metagenome | 115 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272439_10001511 | F017767 | N/A | MKDVLISSTMSMSDDSFASESLITECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQI |
| Ga0272439_1000151106 | F065269 | N/A | MIKSTELESESMSIAHYELQNVERKSLLSQNQTASEEEDMNASLNTEEENMNMLFFNHEMIKISISIELNA |
| Ga0272439_1000151107 | F079402 | N/A | MQNKLKMNKNHFSIEEMKIAYVKSRVSETTIKHIALRMRNMITNSFLEAEKILSIINKMYNNLN |
| Ga0272439_1000151108 | F025887 | N/A | MSDDSFDFKSFTVDIILSSLEKIFRSLALINTEVTDMTFINESLMSKLCEHFDIQLISL |
| Ga0272439_1000151115 | F044226 | GAG | MMKFSDNFNIFLIISMISFYFNKEFHFRMSFDSDTTDYETTHERLEARKADDIVI |
| Ga0272439_100015113 | F000597 | N/A | MKEMLISLMMSMSDDSFASESLTIECVLSNNEISYSLKSLIDIKTVDYSFIDEVITQIVYDQLQIESLTLIKAKSIREFNDHYAKKLITHVIYLNLTVQDHTIDTAFILITRLNQHQMILEKL |
| Ga0272439_100015118 | F032102 | N/A | MKIVDLEKNNDQSIYRQVLDANEINENCMLLREAIARDEAQYEDIKLKNCRTQNEILFHDSQL |
| Ga0272439_100015119 | F036036 | N/A | MLVSLIHHLFSCFDQSFASEDQCLIHVIKYIFDSSDLQTFASAFILDDVEVEAHMRVKALVHEEESQEDD |
| Ga0272439_10001512 | F003820 | N/A | MKLFSYLEYDDCTLMNNLQNKINNRLQNALSICSKDFTTLHRLKSFLQSVNNKQRVNYQLRSERCMIIVKVIIASEKRVTLLSAVMTSIIKYVKSTIFSTSESVRSSIVCYICKILNHLSKNCSQNKINTSASQAFIFRLHEIVISKNKENEKMSSFEDSEAKN |
| Ga0272439_10001519 | F059497 | GAG | MFMKDIDRKIVYNTQCKLNVINVFSVNETTQNLEDIKVKLSLKYQNFLNIFDRAQANKLSSHHSYDHKIKFTSDVISSCC |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |