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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031471 Open in IMG/M |
| Scaffold ID | Ga0272439_1000187 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 131046 |
| Total Scaffold Genes | 138 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (26.09%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F008735 | Metagenome | 328 | Y |
| F044226 | Metagenome | 154 | Y |
| F059497 | Metagenome | 133 | Y |
| F065268 | Metagenome | 127 | Y |
| F074204 | Metagenome | 119 | Y |
| F096307 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272439_10001873 | F096307 | AGAAG | MLYIVVTQIDASLKENVLKHKKDVDLKNVCNTKKCVCHRNLLITRNTKKCVCLKDIKSXLEDARKEKRCXIISESNLSQI |
| Ga0272439_100018754 | F065268 | N/A | MTRSTESESVSIAHYDFQNVRKESLLSQNQTTSEEKDMNASSDTEEKNMNMLLFDHEMIKISISTELNAXISTHEADNIVVFIKYIC |
| Ga0272439_100018764 | F059497 | GAGG | MFVEDIDRKIVYNTQCELDVINVFSVNETTQNLEDIKVKLSSKYQNFLDVFDRAQADKLSSHCSYDHKIKLTSDATSYYCXAY |
| Ga0272439_100018770 | F074204 | N/A | LTFKDSHMIVFCILHQAQSKVFTFALINSEVFAYIFMNKFFTQQHHFFLHQLTHSCRLQEFDNQVTLINDITYVIEITIIFNEHIKKPFFYVIELN |
| Ga0272439_100018772 | F001951 | N/A | MKFKFIDSLRNEKERDKDTIKTTVTKMMIFEFKKLLIDAEIFLTLMNETIMKMKXD |
| Ga0272439_100018775 | F008735 | N/A | MREIIIIIHVHALYQTLLSCIQLIFILLILKYVEKLLKSKSNEDSDRICKEVNNKKRLIVQDLYNDLSYYCKKLRIQFYINXRIENDEXKXDDNIMLLNLILKLSHCTKDLKXIFDHTLSELFNNMLIIDXKIVKXLHLSERIIKQDFNVXKYCRKCKSFIMSKTELN |
| Ga0272439_10001879 | F044226 | N/A | MQNDXAKXLLMMKFSENFNIFSIISMTSFYFNKSFHSXMSFDFNTINYEITRECLEARKANNIII |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |