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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031471 Open in IMG/M |
| Scaffold ID | Ga0272439_1000222 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 120183 |
| Total Scaffold Genes | 123 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (18.70%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (18.18%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F001951 | Metagenome | 612 | Y |
| F003820 | Metagenome | 466 | Y |
| F010214 | Metagenome | 306 | Y |
| F011463 | Metagenome | 290 | Y |
| F021026 | Metagenome | 220 | Y |
| F023763 | Metagenome | 208 | Y |
| F040408 | Metagenome | 161 | Y |
| F048018 | Metagenome | 148 | Y |
| F096306 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272439_1000222114 | F040408 | N/A | MYDYKLIFDIHIENDAMKEEVSAAKKRIEMLQDKQNTLM |
| Ga0272439_100022215 | F096306 | N/A | MFAMYDNCAVDSLIIDDNFNEERLCKDNSELHASMILFNIAILIVTNVKIVFVESNNK |
| Ga0272439_100022227 | F010214 | N/A | VSVLFIYDTSSLLCSSLMIFYTTMFXFNSXFKDERCFLCIHDACDCNVRKAAFSCSMIVIHCAEKYVMKERCTRXEDRVXLYXVTLFFSXFDLCHVDVEXIVSINMQSQSFDVXLXSMKKNAFXSFSXALNFSRRQIYDLTSSKEGEFKLSQYISVIDKSLLLRAL |
| Ga0272439_100022228 | F010214 | N/A | MRVSVLFDYDASSLLCSSLTIFYTMMFRFDSXFKDERCFLCTYDAHDCNICRAMFSYLMIVIHXAEKYVMKERCTXXEDRVXLYXVILFFSXFDLCHVNVEXTVSINVRSQSFNVXLXSMKENAFXLFSXALDFSRE |
| Ga0272439_100022230 | F001951 | GAG | MIMMKFRFINSSRDEKERDEDTVETTVTEMMIFELKELLVNAEMLLTLMNKMMTKMKQV |
| Ga0272439_100022235 | F023763 | N/A | MSFQNCLMLILMLRIECIFLFKKIFXVTCQSIQLIINLVEMISDVIVESKQKLASTSLMMTQLLSXHEILKVFVIRDHLNRINKIFKLXLSFLESANNDHKFFIVDLVVTLDXIMLLQKVSDXMKNFILIILRKNVFEHIVXSINFYHNLVIXIIMTKNNLESEDFLKNVECNLTFLKSDKEYIFSDEMSEQSSYSTIVIDESSIKVHEI |
| Ga0272439_100022236 | F048018 | GAG | MIQRRSLSELSTYFLSXKYRXFLCSSHLIKEILLXYYASLQSTSIIXAANLSLILTCFHNVXVRVSAESSSRFRVSXSNXDLMFSTLNSSISRFMKTKICKNAEIIENRCNXTESRTMICDXNFMTLMSKMSKMRFLTILRFKTXVFRIVXCXYXC |
| Ga0272439_100022240 | F011463 | N/A | LKKTKQIIEDQINKHRQDVIYEINDXVXLSFRNVKTTRSCKDLKDKQLEFYQIMIKVEIFYHLCLSISMKQLHSVFSLKLLHSYFNDLLSEQHSESFRLLTIENDEHXEINDILNFRCYXDXIQYKIKXTRLNQNNEXYYVDKEEFKNSKEVLVKFHKLYSDKSH |
| Ga0272439_100022261 | F000597 | N/A | MSDYSFASESLTTEYVLSSNEISYSLKSLMNIEAADYSFIDEVIVQIVCDQLQIESLTLIKAKSIREFNDHYAKKLITHVIYLNLMIQDHMIDIAFMLITXLD |
| Ga0272439_10002228 | F021026 | N/A | MNKFFAQQHHLFLHQLIHSCRLQEFDDQVALINDITHVIEITMILDEHIKRLFFYITELSQYLIIMSLSXLYCHVIDVNFEHNILILSFFFCFNHCCSSLVKIYDLNQQEENFSFKVNKVAFFLLEVSIEXVIXVSFN |
| Ga0272439_100022287 | F003820 | N/A | LQNALSICSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIIKVTVVSDKHAATSLSAVTTSIIEYVKSTIFSISESVRLPIVCYICKISDHLFKNCSQNKINTSTSHAFTSRLHEIVISKNKENEKMSFENSEAKN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |