NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272439_1000266

Scaffold Ga0272439_1000266


Overview

Basic Information
Taxon OID3300031471 Open in IMG/M
Scaffold IDGa0272439_1000266 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)109387
Total Scaffold Genes108 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (21.30%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003820Metagenome466Y
F032884Metagenome178Y
F036035Metagenome170Y
F038010Metagenome166N
F040408Metagenome161Y
F041516Metagenome159Y
F048019Metagenome148Y
F104132Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0272439_1000266102F041516N/AMIQKVIHIHETYNLSLRNHEIIHEKENLSDIEKMLHMLKESILVKNFNLHHFTXEESFYS
Ga0272439_1000266107F032884GAGMTIRNERVEREECERTKKNESTMMRVEKERLYAQTIDVIDQRKDIKQRLXPGYM
Ga0272439_100026657F003820N/AMKLFSYLDYDDCTLINDLQNKINNCLQNALSVCSEDFASLHRFKSFLQEVNNKQRANYQLRSEQRTVIVKIIVVSDKRATFLSAVMTLIIKYVKSTIFSIFELVRSSIVCYICKTSDHLFKNCSQNKINISTFCAFTLHLHEIVILKNKKNEKMSFSSSENSEAKN
Ga0272439_100026663F040408N/AMYNYKSIFDIYIKNDAMKEEVLTAKECIEMLQDVQNTLMQXX
Ga0272439_100026668F048019N/AMNDHAFKLFIAEDFVKALQDKFIMYAFIMINVIKESIIEHQVKVMNNMMSRITNAFETQTLLVKLKEYEDVFLIESVDKLFLHEDYDHAIEITAKSSYELLYNLLNT
Ga0272439_100026672F038010N/AMNNDHLVFSDNLESNKINVNLSVLIDINVIDYAFIDDSFAQRHSLLCFSLSEICTLQKFNNQSVIFNSITHYALVKLQVLSEKLEEILFYVTQLSQFSVVLDLLXLKSHKAIIDLRHNQLIFES
Ga0272439_100026678F104132AGAAGMNEILNSQVKNSQLEYLIKXTEIEENSXVKFANVMNVIEVINVYHAXNFDRSNKNLXIAYVQESSDSEYESEN
Ga0272439_100026698F036035N/AMKDRMKNDATXRKHHELEKASRNHERDNSDHSNDILDKHTELISDCDVIKKSNERERK
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