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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031471 Open in IMG/M |
| Scaffold ID | Ga0272439_1000402 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 86869 |
| Total Scaffold Genes | 94 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (20.21%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005901 | Metagenome | 386 | Y |
| F008169 | Metagenome | 337 | Y |
| F010214 | Metagenome | 306 | Y |
| F011463 | Metagenome | 290 | Y |
| F048018 | Metagenome | 148 | Y |
| F104135 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272439_100040213 | F011463 | N/A | LKKTKLIIEIQVNKHKRNVIYEVNDXVXLSFRNVKTTRLCKDLKDKQLSFYQITAKVSIFYHLHLSVSIKHLHLMFSLKLLQSYSEDFLSEQHSESLRSITIEDDEHXKIDDILNFRRYRGRIQYKVKXTDLDRNDEXYYVDKEKFNDSEKVLNEFYKLYSNKPR |
| Ga0272439_100040217 | F008169 | N/A | LSTEEHFEEFRNRFSQISDADSLKLSSAESFISENDESFTETVILSVSIQNXKARCMILDREMNRLNKLSNQQDDEIKELKTRLQTKEITSSDFIYSERSKSQKIPDSFXFTDEKNSTWKNXYGKIQNKLEINVDLFSNEXVKLSYIHFRLFNDTADVAQSRRERDCVNLYKIIDDFLKELAELFNDSDKKVNFRRKYYNLVQESKKFSEFYTQFQRLSFYLKYHEKQLIVDLKDKINSRLXFVXIDQLVQSDSLKEIHFYLIHLNNDQRAVXEMKNKVNLIKRVDDLSKIIFHKAVVTQSVNHSKSDYLKPRDAILTNVKKADVLVETCFICHKSGHSSRECLDXSTRINAVNNEYDRFDFDLNFDSKN |
| Ga0272439_100040225 | F010214 | N/A | MRVSVLFDYDTSSLFCSSLMIFYTMMSRFDFXFEDERRFLCTHDARDCNVRRAVFSYLMIVIHXAEKYVMKERCTXXEDKVXLYXVTLFFSXFNLCHVDVEXIVSIGMRSQSFDVXLXLMKKNAFXSFSXALNFSCE |
| Ga0272439_10004023 | F048018 | GAG | MIXRHSLSELNTYFLSXKYRXFSCFSHLTRKILLXCHALLQSTSIIXIANLSLISTCFHNVXVRMSAESSSRFRVSXFSXSLMFSTLNSSISKFMKARICKNAEVIKNKCNXTEFKMMICDXSFMTLMLKISKMRFSTILKFKTXVFRIVXCXYXCQESNVSFSLERFSERHVKAFNLSLILLKX |
| Ga0272439_100040239 | F005901 | N/A | LIFNVNQFNDETIYIIYMMFRLKDDAAKYIFAXRCFNSLNSFISIYKLFDHLNEIYNELNKNQKSXREYNALKQADKFFNIFYFNFMKLFSYLEYNDCTLMNDLQNRINNRLQNTLSVCLKNFTSLIHLRIFLQDVNNKQXVNYQLRSERCTVIIKVTVISDKCIATSLSMTTLIINYVKFIISFIFESARSSIICYTCKTSSHLSKNYSQNKINTSAS |
| Ga0272439_100040254 | F010214 | GAG | MRVSVLFDYDASSLLCSSLTIFYTMMSRFDSRFEDERRFLCTRDARDCNVCRAVFSYSMIVIHXAEKYVMKERCTXXKDRVXLYXVTLFFSXFDLCHVDVEXIVSINVQLQSFDVXLXSMKENAFXLFSXALNFSHE |
| Ga0272439_100040256 | F104135 | GAG | MIITNVQSISIIXNVLIDLVTQLKINLQKEYILLSKXSXDKNLHNXDKVNKKTHLKRKKSYXSTKLNFSSKMNSHASLCYSKNLFNITCYMCNKKSHYFTNCKDEKIKNRSKESDANXVFINLMSHMSHFKILKKDKLSMNASNHXEKNKKFSL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |