NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272439_1000533

Scaffold Ga0272439_1000533


Overview

Basic Information
Taxon OID3300031471 Open in IMG/M
Scaffold IDGa0272439_1000533 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)74042
Total Scaffold Genes92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (20.65%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010214Metagenome306Y
F020121Metagenome225Y
F061400Metagenome131Y
F086377Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272439_100053321F061400N/AMNLNSEKIIIEAXNIYCXEEDEDNMIDESDDFFKTDLQNVLHSINV
Ga0272439_100053343F010214GAGVLFVYDASSLLCSSLTIFYTTMFRFDSQFEDERCFLCTRDARDCNVRRAAFSCSMIVIHCAEKYVMKERCTRXEDKVXLYXVILFFSXFDLCHVDVEXIVSIGVRSQSFDVXLXSMKENAFXSFSXALNFPRRQIYDLTSSKEGELKSFQYISVIDESLLLRAL
Ga0272439_100053355F086377N/AMIQRFXDQRQIISILDCDSVQISIVHAEAKFFFKFLDEENRDNHLRVTDSNEIFAQIFIQITTKF
Ga0272439_100053358F020121GAGMKKLTEHLHNEMLIAQIIYKFNVNLSHCSCSRYFVEDKVXLNACNLNIAHFAVKLDDCNVDLFKIKHVFKNNFLIIELNLSTFMKIHSIFHVILLSHIASDSLSSQHQKLQKLIIIKNDKRFXYVNSILNFKHDRHYNLSLLKYYIDXENYFFTXKSFHLLNNCEQAFNEYHLINSVVEESHVLSCVMSQC
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