NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272439_1000613

Scaffold Ga0272439_1000613


Overview

Basic Information
Taxon OID3300031471 Open in IMG/M
Scaffold IDGa0272439_1000613 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)67692
Total Scaffold Genes78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (26.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013598Metagenome269Y
F018839Metagenome232Y
F037509Metagenome167Y
F046102Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0272439_100061314F037509N/AMILISLFIQVNSTDNEMSIKKFVYLMIDDFKKQNNIKKLIESMKTYDCXIARESKAHSVCISSFD
Ga0272439_100061338F013598N/AMNFIINLFDSSEYNAILMIICKLSKERHYISCIIDDEDITVKKTAEMLIQ
Ga0272439_100061353F018839N/AMMIAKVVTFNRLTSDLYAAVSIIAMFIELKDEAKLTELDDFTILLNENDFSLSXVTTKEIDLFSI
Ga0272439_100061354F046102GAGGVTFIKDVMKDVLISSTTSSLNDFFASKSLTTECVLSSNEISYSLKSLIDIEAADYSFIDELIAQNVCDHLQIKSLSLIKLKSIREFDDHYAKKFITHAIYSNLTVQDHMKCFVFMLITRLNQHQMILEKTXMNKIEMTIDIKDDLLQFSSFEAHIKASIKVHSTVLSSKKIAIEQKSSIF
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