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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031471 Open in IMG/M |
| Scaffold ID | Ga0272439_1000638 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 66274 |
| Total Scaffold Genes | 74 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (10.81%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002432 | Metagenome | 559 | Y |
| F010214 | Metagenome | 306 | Y |
| F017941 | Metagenome | 237 | Y |
| F021452 | Metagenome | 218 | Y |
| F026450 | Metagenome | 197 | Y |
| F038484 | Metagenome | 165 | Y |
| F058565 | Metagenome | 134 | Y |
| F059496 | Metagenome | 133 | Y |
| F065269 | Metagenome | 127 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272439_100063812 | F058565 | N/A | MNCNNVDSKMIASDVDSLQENRDSKSKCSRNNEKNIANIIDLLIKISTLEKEKSKDHS |
| Ga0272439_100063823 | F059496 | N/A | LIFKDSYNXILRIQKKVDTKAFIYVMFRDCTKLERNVFVTXEEYNVDEQDVVERKEC |
| Ga0272439_100063826 | F065269 | N/A | MTRSSESTSIACYDLRNARRESLLSQNQTASEEEDTNASSDTEEENTNVLLFDHEMIKISISTELNA |
| Ga0272439_100063842 | F021452 | N/A | VIENDILIFCFISIFDDSFDFKSFTVNVILSSLEKIFRSFALINTEVTDMTFIDESLMSELCECFDIQSISLLKSKSIXSYDEIFDQKSITHTLYTLIMIQEHKNEMMFLLITCLNQHKIIIENLXLKRNQILINFAND |
| Ga0272439_100063849 | F017941 | N/A | MKIADLKKNISESIYKQILEINEINENCMLLCEAIAKDETQYEDIKLKNC |
| Ga0272439_100063850 | F002432 | N/A | MYELQLQLQLQLTMXQSLCKXLKITINLLTVYHSEINNQSEXVNQDVECKLRIYCNYMQNDXAKXLLMMKFSENFNIFLIISMTSFYFNENFHSRMSFNSDTTDYETTHERLKARKADDIIIQMKKLLIFNLQQLKKTKQIIKAKINKHRXDVIYEVNDXVXLFSRNIKTTKSCKNLKDKQLELYQITVKVEIFYHFRLLISMKQLHSMFSSKLLCSYFNDLLSEQHSESFKFLTIKDDEHXKINDILNFRHYXDXIQYKIKXTKLDXDDKXYYVDKEEFKNLKEVLVEFHKLYSDKSH |
| Ga0272439_100063851 | F010214 | N/A | MKVSVLLDYDASSLLCSSLMIFYTMMFRFDLXFEDERRFLCTHDARDCNIRRTVFSYSMIVIHXAEKYVMKERCTRXEDKVXLYXVILFFSXFDLCHVDVEXTVSINVQLQSFDVXLXSMKENAFXSFSXALDFSRE |
| Ga0272439_100063867 | F038484 | N/A | MRSILMCIARVLSAFXRSSRIFTVLLLRCNLCAEIVLMSATRSLYFSHRXFHXSLXYCVIAMLSLVEIIVKKRVHRLRLDCIFASSXMKTFRSTIFLMMSEREMTRLTFVKRTCISSHACLISCVQSSTXLCSVILFCSMFRXTCSELMYVSASRVSMFTLLNASATXCRVXFXSVSSLHSLLNSSSFLSRXCQIDASNVISDLTTAEYTCLAFVKIASHVKTSRXLSVSILVTXFVSICXRCTSHCSFMFSCTFKTRTSDFDLITELSICMSIENMLHTLHATYIRHNLYADFSLSER |
| Ga0272439_100063874 | F026450 | N/A | MTSSSIVEHCSSLDFFLLKHSFNSTSSFFFIMSRLFKERFEASFFIVEDNNSFAEIITPSMTMKALKKRCEELKARLQAREIISSSSTYSERSRSQKILDSSLFTDEKNFIXKNWYEKVQNKLEINVDLFSSERVKLSYVHFRLFDDAAEITQSKRERDCFNSYKIIDELLKELAQLFNDSDKEVNFRRNYYNLIQEQKKFSEFYTQF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |