NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272439_1000696

Scaffold Ga0272439_1000696


Overview

Basic Information
Taxon OID3300031471 Open in IMG/M
Scaffold IDGa0272439_1000696 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)62863
Total Scaffold Genes85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (40.00%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F013598Metagenome269Y
F025887Metagenome199Y
F028978Metagenome189Y
F032102Metagenome180Y
F079402Metagenome115Y
F098339Metagenome103Y
F098340Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0272439_100069611F079402N/AMQNKLKTNKNHFSIEEMKIAYVKSRVSETTIKHIALRMRNMITNSFLEAEEILSIINKMYDDFNQHHMTQQQFLKLYQNKIFFHEF
Ga0272439_100069616F000597N/AMSDDSFASESLTTECVLSSNKISYSLKSLIDIEAADYSFIDEVIVQIVCNQLQIKSLTLIKAKSIREFNNHYAKKLITHVIYLNLTVQDHTIDTAFMLIIQLNQHQIIFEKT
Ga0272439_100069620F032102N/AMKIADLKKNISESIYKQVLDANEINENCTLLREAKIRDEAQCKDIKLKNCRVQNEILYKDSQL
Ga0272439_100069621F013598N/AMNFIINLSDSYDYNTILTVICKLLKERYYISCITDDEDITVEKTAEMLLQ
Ga0272439_100069623F098339N/AMIEFVNNNVLFSVISLTLFFINKSFHSRMSFDSDIIKYESIRERLQITRVENIFNHMNKTLIFAREALIKTREQIMNQTNKHKKKINYEIESKMFLNE
Ga0272439_100069628F025887N/AVTENDILIFCFISMFDDSFNFKSFTVDIILSSLEKIFRSLALIDIEVIDMTFINESLMSKLCECFDIQSISLSKSKLI
Ga0272439_10006963F028978N/AMKIADLEEKENDESIYRLILKANRINENYILLREIILKDEAQYEGTKLRDCRVQNEILYRNDLL
Ga0272439_10006968F098340N/AMIKVAVYQTLVKNKKIKIFFLIISEINKALSSVKDFAKLNEMIFVMSLDELKKKLSLVYHDFLNVFDREKTTQLSLH
Ga0272439_10006969F025887N/AVIESNILIFCFISMSDDSFDFKSFTVDIILNSLEKIFRFFALIDIEVIDMTFIDESLMSKLCECFDIQSISLSKSKSI
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