NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272439_1000743

Scaffold Ga0272439_1000743


Overview

Basic Information
Taxon OID3300031471 Open in IMG/M
Scaffold IDGa0272439_1000743 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)60350
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (15.62%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F026450Metagenome197Y
F036994Metagenome168Y
F048018Metagenome148Y
F094625Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272439_100074316F001951N/AMTMTKLKFIDSSRNKRERDENTVETTVTKMMIFELKELLVNAKIFLTLINETMMKMK
Ga0272439_100074338F036994GAGMIIEADSLVDLLIEEIDYRLVIEADSLVAREREIDQFTDR
Ga0272439_100074345F048018GAGMILSXVSXMIQRRSLFELSIYFLSXKYRXFSYFSHLIKEILLXCHASLXSVSIIXAANLSLISTYFHNVXVRISAKSSSRFRMSXFSXNLMFSTLNSSISRFIKVKICKSVEITENKCNXTEFRIIICDXSFMTLMLKTLKVRFLIILRFKT
Ga0272439_100074359F026450N/AMTLSSIVEHCSSLDLFLLKHSFNSISSFFLIMSRFFKERFEALFFIVEDNDSFAEIITSSMTMKALKKRCKELKARLQARKIISSSSIYSERSRFQKILDSSLFTDEKNSIXENXYEKVQNKLKINVDLFLSERVKLSYVHFRLFDDAAEITQSRRERDCFNSHKIVNELLKELSQLFDDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIIDLKNKINSXLRFA
Ga0272439_10007439F094625N/AMIENSVEIFRAMQELQNQVQQHDVIISFSFIIFSSSIYIKLNSQSLATITQIIAQILNNQSFLVIHSSANSIAIFIAFKFKKLLNIFKYEKNKDQLNAXKQSLIQRMNMNDNHYFFHQVKIIYVESXLKKKQS
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