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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031471 Open in IMG/M |
| Scaffold ID | Ga0272439_1000856 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 55855 |
| Total Scaffold Genes | 60 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (38.33%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F042102 | Metagenome | 158 | Y |
| F057012 | Metagenome | 136 | Y |
| F061400 | Metagenome | 131 | Y |
| F061402 | Metagenome | 131 | Y |
| F065268 | Metagenome | 127 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272439_100085624 | F042102 | AGAAG | LLFDHEMIKISISTELNAXISTHEADDIVVFIKYICQQHDIEIEIYNDMIQMLEDVNNINITLKAVQTRLQKEMRDKNMIIHHLETALSRQSTLISEDHFLKLIKLLNSSLFEDSSQNVNNXLSRMXNKLKTNKNHFSIEELKIVYIESRVSKATIKHIASRMQNIFLNSFLEVEEVLSMINKMYDDLNHHHTTQXQYLKLYQNKIFFHEFXMKFQRFSAELEYNNETLLNDLQHKISSDLQQATLNEQITNLNEFINICMQVDVRLTELNAXSVVEVSVTQATHSVSSTLTVQFTSSVS |
| Ga0272439_100085633 | F057012 | N/A | MSDDLFDFKSFIVDIILNSLEKIFRFLALINTEVTDMTFIDESLMSELCERFDIQSISLSKSKLIXSYDETSNXKLITHALYTLIMIQEHKNEMMFLLITCLNQHKIIIENLXLKRNQILVDFANDRLISSLKIRTLKSVVSKASSQSAFHKPESNKTCKMKQKNLNLIITSIIILKRLLNQKSVNRFIEFALITKQST |
| Ga0272439_10008564 | F061402 | N/A | MQDDXFVXLSMTEFVDNNAISLSIEQLTFFLNKNFHSCMSFNSNSTEYEITXTRIEANKAENIFEHMK |
| Ga0272439_100085640 | F061400 | N/A | MLLKYYNCIRNLNSEKTIIEAXNIYRREEDEDNAINESNDSFKTDLQNVLHSINV |
| Ga0272439_10008567 | F057012 | N/A | MTRSMLIFNIIDTEVIDITFINESLMSELCEHFDIQSISLSKSKLIXLYDEISDXKLITHALYTSIMIQEHKNKMMFLLITRLDQHKIIIENLXLKRNQILINSANNRLIFSLNIQTSKSVVSKTSSQAAFHKSESSEICKMKXKNLNLMIMLTIILKRLTNKKLVNQFIESV |
| Ga0272439_10008568 | F042102 | N/A | MLKITQTRLQKENRNKNVIIHHLKAASSXQSTSISEDQSLKSIKLLNSLLFKDSSQNVNNXLSRMRNKLKANKNHFSIEELKIVYIESXVSEAAIKHIASXMRNTSLNLFLEVKEVLLIINKMYDNLNHCHTTQRQYLKLYQNKIFFHEFXMKFQRFSAELEYNNEILLDNFQHKISSDLQRATLNKXIINLNEFIDICMQVNVRLTELNAQSVVKALMTQAAQSVSSTLTARLTSSISLXKKFRRSNLDSIQKELFKKELCFKYKKLKHKAYDCLKMTQVHKIAANLKNNLLLSK |
| Ga0272439_10008569 | F065268 | AGAAG | VSIAHYDLQNARRESLLSQNXTASEEEDTNALSNTEEENMNALLFDHKMIKISISTKLNAXVNTYKADDIVIFIKYIC |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |