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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031471 Open in IMG/M |
| Scaffold ID | Ga0272439_1000880 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 54832 |
| Total Scaffold Genes | 50 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (18.00%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F010214 | Metagenome | 306 | Y |
| F021216 | Metagenome | 219 | Y |
| F023763 | Metagenome | 208 | Y |
| F038008 | Metagenome | 166 | Y |
| F044227 | Metagenome | 154 | Y |
| F046102 | Metagenome | 151 | Y |
| F064252 | Metagenome | 128 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272439_100088025 | F021216 | N/A | MKSRMKSNLMRREHHELKKALRNHERSDNDHLNDILNEHTESISSCDVIKESDEREKK |
| Ga0272439_100088026 | F038008 | N/A | MKXSHLYMMILXSESLRIVIVANKKMSINQHHLDTFALKQRVYLNDNDSKEDVTTTAMRINXELNKRLRKLTLIITHHEELKELIVRMKRLADVVTENQECHEKIYKVYSDSQTSLKTVKAMISTKDQTCLQQVQITHENIQS |
| Ga0272439_100088030 | F010214 | GAG | VSVLFIYDASSLLCSSLTVFYTTMSRFDLRFKDERCFLCIRDARDCNVRRAAFSCSMIVIHCAEKYVMKERRTRXEGRVXLYXVTLFFSXFDLCHVDVEXIVSIDVQSQSFDVXLXSMKENAFXSFSXALNFPRRQIYDLTSSKEDELKLFQYISVINESLLLRAL |
| Ga0272439_100088031 | F046102 | N/A | MSSSDDFFASKSLTIECVLFRNEISYSLKSLIDIEAADYSFIDELIAQNVYDHLQIESLSLIKLKSIREFNDYYVKKLITHAIYLNLTVQDYMKRFVFMLITRLDQHQMILEKTXMNKIKMIIDMKDNRLQFSSFEAHIKASIKAHSTVLSSKKIVIE |
| Ga0272439_10008804 | F000597 | N/A | MSMSDDSFTSESLTTECVLSNNEISYSLKSLIDIKAADYSFIDEVIVQIVYDQLQIESLTLIKAKSIQEFNDYYAKKLITHVIYLNLTVQDHTIDTASMLIT |
| Ga0272439_100088045 | F023763 | N/A | MNFQNCLILILMSRIECILLLRKIFXATCQSIQLIIDLVKMISDAIVEFKQKFTSMSLMMTQLLNXHEILKIFMICDHLNKINKIFELXSSFLESANNDYEFFVIDFVVTLN |
| Ga0272439_100088047 | F044227 | N/A | MQLQIKSSDDEECTHALLELIASAIKNATRCXLLELSNNHHHHEEFQSSSKDDDENKALEAI |
| Ga0272439_10008808 | F064252 | AGG | MIIDTLEETNKRYQEKMLNLKNKLKEVLHSADQSRSRQSTESQVSTKSLSRQSIKNHTQRKLFTLFNNDHHKSFKFLNSSVFIDEDESTXDSXRIKINDKLQTNVDHFVNETICIVYVISRLEGDAAEHIFAXCHHDALHSYISIYKLLKHLEEIYEDQNKNXKCHHEYNALRQADKFFNVFYFNFMKLFSYLEYNDRTLMNNLQNKINNCLQNALSICLKDFIILHCLKSFLQSMNNRQXVNYQLRSERCTIIIKVIITSEKRVTSLSAVMTSIIEYVKSTIFSTSESVRSSIVCYICKISDHLFKNCFQNKINTSAFHVFISCLHEIIISKNKENEKMTFFFKNNEAKN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |