NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272439_1000900

Scaffold Ga0272439_1000900


Overview

Basic Information
Taxon OID3300031471 Open in IMG/M
Scaffold IDGa0272439_1000900 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)54130
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (29.51%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013598Metagenome269Y
F024448Metagenome205Y
F048685Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0272439_100090010F013598N/AMNFITDLFNSSEYNAILMIICKLSKKRHYISCITDDEDITVEKTAEMLIQ
Ga0272439_100090011F048685N/AMYRSDKQNIKINALTRXADVMLRDSEDEHVCYQXITILTSNXMKIADLKKNISESIYKQILETNEIDENCTLLREAIARDET
Ga0272439_100090013F024448GAGGVTFIKDVMKDVLISSTMSSLNDLFASKSLTTECVLSSNEISYSLKSLIDIKAADYSFIDEVITQIVCDQLQIELLTLIKAKSIQEFNDHYDKKSITHVIYSNLTVQDHMIDTASMLITQLNQHQMILEKTXMNKINLVIDMQIDFLRFSNFISSQKLIVSLSSNKTITKQKSLTSTHILKRFFTFVTSQFS
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