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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031471 Open in IMG/M |
| Scaffold ID | Ga0272439_1000906 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 53873 |
| Total Scaffold Genes | 70 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (20.00%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008668 | Metagenome | 329 | Y |
| F033265 | Metagenome | 177 | Y |
| F033266 | Metagenome | 177 | Y |
| F036994 | Metagenome | 168 | Y |
| F037509 | Metagenome | 167 | Y |
| F046102 | Metagenome | 151 | Y |
| F065268 | Metagenome | 127 | Y |
| F066295 | Metagenome | 126 | Y |
| F087978 | Metagenome | 109 | Y |
| F096307 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272439_100090626 | F096307 | N/A | MLYIVVTQIDASLKENVLKHKKDVDLKDVCDTKKCVCHRNLLITRNTKKCVCLKDNKSXLEDIKEEKRCXVISESNLSQI |
| Ga0272439_100090627 | F008668 | N/A | MTSFYFNKSFRFQMSFDSDMTDYKTIHERLEAKKANNIAIXMKELLIFDHQQLKKTKQIIEVQINKHK |
| Ga0272439_100090634 | F087978 | N/A | MFSSKLLQLYSEDSLSEQHSESLRSITIKNDEHXKIDDILNFRRYXDQIQYKVKXTDLDKDDEXYYVNKEKFNDSEKVLNEFHKLYSNKSR |
| Ga0272439_100090635 | F033265 | N/A | MFSVIEKTMTSQLKKRFKSCYETSIDCMIYSVLLFXTETLNSYRLCEKVFASDXESQLVYSQSIILRSTINRNESIKTLNANLESTAITCRTTESNEYLXXNSATIQISSQSLQXFSSTSIKNFTLEXVSIQIRLTTKQLMNNLKLEKQMILSFKXKSYXTLIINNXKRRSXSLKFRSINIDETSHMK |
| Ga0272439_100090640 | F033266 | N/A | MPSHSSTEERSEEFRNRFSQISDADLTKSSSAASFIHEDDESFAETVILLVFYEIXKTXSLVLDEETDQLYKLNKKQEDEIKELKTRLQAKENTSSDFIYSKRSRS |
| Ga0272439_100090653 | F046102 | GAG | VTFIKDVMKDVLISSTMSSSNDFFASKSLTIECVLSSNEISYSLKSLIDIEAADYSFIDELIAQNVYDHLKIESLSLIKLKSIRKFDDHYAKKLIIYAIYLNLTVQDHMKHFASMLIIQLDQHQMILEKTXMNKIEMTIDMKDDCLQFSSFEAHIKASIKAHSTVLSSKKIAIEQKSLIFTQILKRFISSVITXLSEKLSLLRF |
| Ga0272439_100090660 | F065268 | N/A | MTRSSESASIAHYNLQNARRESLLSQNXIASEEKDTNVSSDTEEKNMNMLLFNHKMIKISISTELNAXISTYEADDIIVFIKYYECVRID |
| Ga0272439_100090662 | F037509 | N/A | MILISLFIQIHSTDNEINIKKFVYLMIDDIKRQNNIKKSIESTRTYNHVIAKKSIAQSVASVQID |
| Ga0272439_100090666 | F036994 | AGCAGG | MXDRMIIEADSLVDLLIEEVNYXLALEAGSLVACEREVDRFTDR |
| Ga0272439_100090670 | F066295 | AGAAG | LKTRLQAKENTSSDFTYSERSRSQKIPDSSLFTDEKNSTXKNWYEKIQDKLEINVDLFSNEXVKLSYIHSRLFDDAAEITQVRRERDCVNLYKIVDDLLKELAQLFNDSNKKVNFRRKYYNLVQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |