 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031471 Open in IMG/M |
| Scaffold ID | Ga0272439_1000947 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 52252 |
| Total Scaffold Genes | 56 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (19.64%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (22.22%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F007840 | Metagenome | 343 | Y |
| F008668 | Metagenome | 329 | Y |
| F019584 | Metagenome | 228 | Y |
| F058565 | Metagenome | 134 | Y |
| F064254 | Metagenome | 128 | Y |
| F094622 | Metagenome | 105 | Y |
| F096305 | Metagenome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272439_100094714 | F094622 | N/A | MFISKQKVYSNDSDSKDDVTAIAMRMNXKLNKRLRRLTLVIIHHDELKELVAKAKHFANIATVNQECHEKIYKVYNDNQTSLKTVKAMILTKDQTRLQQVQIMHESIXF |
| Ga0272439_100094715 | F058565 | GAG | MNCTNCSNAGSKTIASNVDSSQENRDAELKHLHDDKENVANIIDLLIKISTLEKEKNKDHSXKEIALKLIRRL |
| Ga0272439_100094727 | F008668 | N/A | MISFYFNKEFHSXMSFNSNTTDYKITYKRLEARKVDDIIIQMKELLIFDHQQLKKMKQIIEAQINKHRRNVIYEVNDXI |
| Ga0272439_100094738 | F094622 | N/A | MLKQRVYLNDSNSRNDVTVIMMKMNXKLNKKLRKLTLIITHHDELKELVAKAKHLANIATVNQECHEKIYKVYNDNQTSLKTVKAMISTKDQTRLQQVQIMHESI |
| Ga0272439_100094739 | F064254 | N/A | MXKLYELVSFLLSFSFIXFFNDVTVXNXFSMLVKSIIXMITVIMLMISRSFLKFVMFSLHCIIFHSIFHLEHVNRMCLINIQSLSHLHVIVATLSTHLSCKNXLKSIFLMHSCINNALXNFAXFLCSYRCXCVIFDIRYQKXVELNFSFQTILHVCLICFCMSINLVITSMYXCSVSNKDKSCASSIILFITLFLNISACLVTQCNFNMTS |
| Ga0272439_100094750 | F000597 | N/A | MKKMLISSTMSMSDDSFASESLTTKCVLSSNEISYSLKSLIDIKAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYSNLTVQDHMIDTAFMLITRLN |
| Ga0272439_100094754 | F007840 | N/A | MIDAIERQNNTRKFIESTARLIELLDDLQLIKYASFISINRISDKESSLIARESNQSRESINSQIKQQKRLHLLLLSIALRSISFF |
| Ga0272439_100094755 | F096305 | N/A | MSRLFKERFEASFFIVEDNDLFAEIITSSMTMKALKKRCEELKARLQAREIISSSSIYSERSRSQKILDSSLFTDKKNSIXENXYEKVQNKLEINVDLFSSERVKLSYVHSRLFDDATEI |
| Ga0272439_100094756 | F019584 | GAG | MIKAQTTKQIIFVEESVKATCRIIEMKMTDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINALNDEFDHSSNFDSESDSKN |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |