NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272439_1001245

Scaffold Ga0272439_1001245


Overview

Basic Information
Taxon OID3300031471 Open in IMG/M
Scaffold IDGa0272439_1001245 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43951
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010214Metagenome306Y
F021452Metagenome218Y
F038009Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0272439_100124517F021452N/AMPDNSFDFKSFIVDVILNSLEKIFRSFTLIDTEVIDMTFIDESLMSKLCERFDIQSILLLKSKLIXLYDKISDRKSITHALYTLIMIQEHKNEMMFLLITHLDQHKIIIKNFXLKKNQMLINSANN
Ga0272439_100124540F010214GAGVLFIYDASSLLCSSLMIFYTMMSXFDFXFKDERCFFCIRDAHDCNIRKAAFSCSMIIIHCTEKYVMKERCTXXEDRVXLYXVILFFSXFDLCHVDVEXIVSINMQLQSFDVXLXSMKENVFXLFFXALNFLRRQIYDLTSSKEDEFKLSQYISVINESLLLQAL
Ga0272439_100124549F038009N/AMSSMIKALNSQLNYVKLYKRLIELICLKNNRSSRKKRISTLNFXXVFLLNDLKNMTKNFLFQMRDKIKQDLFLVNELNISLLLISERKIILLLVSRXKTELLFVSELRTELLLASELSAELLLMSKXETELLLASELRTELLFASKLSAELLLVSNL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.