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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031471 Open in IMG/M |
| Scaffold ID | Ga0272439_1001614 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 36778 |
| Total Scaffold Genes | 47 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (17.02%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004755 | Metagenome | 424 | Y |
| F023763 | Metagenome | 208 | Y |
| F039410 | Metagenome | 163 | Y |
| F042102 | Metagenome | 158 | Y |
| F055319 | Metagenome | 138 | Y |
| F074203 | Metagenome | 119 | Y |
| F086377 | Metagenome | 110 | Y |
| F094625 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272439_100161414 | F086377 | N/A | MIQRFXDQRQRILILDHDSVQISIVHAEAKFFFKFLDEENKDDHLRATDLNEIFAQIFIQIMMKF |
| Ga0272439_100161421 | F042102 | N/A | MLEDVNKINIMLKAAQTRLQKEMRNKNVIIHHLETASSRQSTSISEDCFLKLIKLLNSSLFEDSLQNVNNXLSRMQNKLKANKNHFSIKELKIIYIESQVSEAVIMHIASRMQDIFLNSFLEVEEVLSIINKMYNDLNHHHMTQQQYLKLYQNKIFFHEFXMKFQRFSAELEYNNEILLDDLQHKISSDLQXAMLNEXITNLNEFVNICMQVNVRLTELNAXLIIKVSAISAARSVTSTLSAQSTSLISAXKKLRRLNLDFIQKELFKKELCFKCKKSKHRAYDCFKTT |
| Ga0272439_100161424 | F023763 | N/A | MLRIECISLFKKIFXATCQSIQLIIDLVEMISDVIVESEQKFTSMSLMITQLLNSHEILKIFVIHDHLDKINKVFKLXSSFLESANNDHKFFIVNFVVTLSXVMLLQKVSDXMKNLILIVLKENVFKHIVXSINFYHNLVIXIIVIKNNLESEDFLKNVECNLIFLKSDKEYIFSDETSEXDSYSTIVIDESSIKVREI |
| Ga0272439_100161445 | F074203 | N/A | MSSHSLTEECFEEFRNRFSQTSDADSSKPRTKSSSAASFIHEDDESFTETIILLMFYEIXKTXSLVLDEETDXLYELNKQQEDEIKELKTRLQAKENTSSDFTYSKRSRSQKIPDSSLFTDEKNFTXKNXYEKIQNKLEINVDLFSNERVKLSYIHSRLFDDAAEITQARRERDCINLYKIVDDLLKELAQLFDDSNKKVNFRRKYYNLVQEFKKFNEFYTQFQRLSFYLDYHEKQLIADLKDKIHSRFRFIXVD |
| Ga0272439_100161446 | F039410 | N/A | MLNKEMLMKENRNXVRSELETLTSSIQPXYARNKTFKTFKLHXVLYVISLSISVMNRAKTSVXFFFDXFSRVLNKAASMLRIENDSFLVVVETDRLSIIEVLVXMIEESEVDRDQLKCFELRRIEKIEIEVFNXFGKTMTSFRIFNNISFLFIQSLLNMTSXXLISAISIDTVNFLXLSMMRLSRILXVMIFLDIFSS |
| Ga0272439_100161447 | F004755 | N/A | DSDKKVNFRREYYNLIQESKKFSEFYTQFQRLSFYLKYHEKQLIVDLKDKINSRLRFVXINQLVQSNSLKKIHFYLIHLNNDQRVIQEIKNKVNLIKRVNDLSKIIFHRAVVTQSVNHSKPDHLKSCDAILTNVKEADVLVEICFICHKSDHNSRECSDRPIRINAMNNEYNCFEFDFDSNFDSKN |
| Ga0272439_10016145 | F094625 | N/A | MKSSHNFLIDNERAVKQFTQSMIENSLEIFCIMQELQNQVXQHDVIILFLFIILSSSVYIELNSQFLAMIAQIIAQILNNQSSFVIHLSANSVTVLITSRFEKLLNIFKYERNKDQLNAXKQSLIQRMNMNDNHYFFHQVKIIYVESRLIIDKKTHNLMSQYXVNDFCIIFIFTD |
| Ga0272439_10016148 | F055319 | N/A | VKRLRLVDKMICIQISECDLAQKLNFSHEQXDFFIYTDDIIVIDIHDMQSEEFFIXAFFSDFA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |