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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031471 Open in IMG/M |
| Scaffold ID | Ga0272439_1001904 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 32927 |
| Total Scaffold Genes | 39 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (23.08%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008115 | Metagenome | 338 | Y |
| F051591 | Metagenome | 143 | Y |
| F058565 | Metagenome | 134 | Y |
| F061400 | Metagenome | 131 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272439_100190428 | F058565 | N/A | MNCMNCSNADSKMIASNVDSLQENKDARLKCSCDDEENVANIIDLLIKISTLEKEKSKDHSXKKIALKLI |
| Ga0272439_100190434 | F061400 | N/A | MNLNSEKTIIEAXNIYRRDEDEDNAINESDDSFKTDLQNVLCFINI |
| Ga0272439_100190439 | F051591 | N/A | MLDAIALYFRYRSSRVISLRIVTTDLDLLPCASRKGKTDSDLIRNALLLXNNVVLCATFGRKEVRFRFLRQYAVFCVVLKSLDDLFFSCEFALRFINQITVXIDDSFFCVDELSFRRRFWPAXAXKILIFDFXLATQSPVKLLSRMRACFDRTIVLYNLSIDLIYHMLR |
| Ga0272439_10019045 | F008115 | N/A | MNFITELSLSENYNVICIIICYLIKKRHYVFCHXKDDDISVEEMIXIMLXNVYQLHDLFSSIVLNRDFQFISTMXQSLCKXLRITASLSTVYHSEINDQLKXVNQDVERELRIYCNYMQNDXAKXLFMMKFSENFNIFSIISMTFFYFNKSFHLRMSFDSDTTDYETTCEHLEARKADDIIIQMKELLIFDCQQLKKTKQITEAQVNKHRXNVIYEVNDXVXLFSKNIKTTKSCKDLKDKQLEFYQITVKVEIFYHLRLLISMKQLHSMFNLKLLCSYFKDSLLEQHLKSSKSLTIKDNKHXKIDDILNFKHYQDQIQYKVKXMRLDXNNE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |