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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031471 Open in IMG/M |
| Scaffold ID | Ga0272439_1002053 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 31348 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (28.57%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005901 | Metagenome | 386 | Y |
| F008169 | Metagenome | 337 | Y |
| F011463 | Metagenome | 290 | Y |
| F017767 | Metagenome | 238 | Y |
| F028368 | Metagenome | 191 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272439_100205313 | F011463 | N/A | LKKTKLIIKVQINKHKXNVIYEVNDXVXLSFRNVKTTRLCKDLKDKQLDFYQITVKVSIFYHLRLSISMKHLHSMFSSKLLQLYSENSLSEQHSESLRLITIEDDEHXKINDILNFRRYQDXIQYKVKXTNLDRNDEXYYVDKEKFNDSEKVLNEFHKLYSNKPR |
| Ga0272439_100205321 | F028368 | GAG | LCKLDEILSEENYFEKSFLIDVFLNSQNQSFSLHSLIDSDSVAHMLIHANLVNRVCKKLEIQPISLTKKKLIRDYDEKIFKKIIIHKILLNLIIESYKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMXNDVIVFLNQLNTSISIFLISLNSKHSSXSXSTSLSSIIQTKTFIMLKRSVLTTTKKESFSIQSINAASFKTLLNXSKKNQTEVFALFMTDIDREITYNTQCNLNVLNVSSINEMTQNLKDIKVKLSSKYHEFLDVFDXVQLNKLLKE |
| Ga0272439_100205322 | F008169 | GAG | VKQTSENKLFNSIKRIDDKESSXIAXESLKNSQTKNIFLINNILFXRLNTXSYIFINTVEHHHSLNFILSSNFTMLKHSSIKERFEEFQSCFSQIFETDSLKLSSAKSFINEDDKSFAETVILSVSIENXKTRCMILNRETDQLNELSKQQDNEIKELKTKLQTKEITSSDFIYSERSKSQKIPDSFXFTDEKNFTXKNXYDKIQNKLEINVNLFSNERVKLSYVHFRLFNDAADVTQSRRERDCVNIYKIVDDLLKELAELFNDSDKKVNFCRKYYNLIQESKKFSEFYTQFQQLSFYLKYHEKQLIIDLKDKINSRLXFIXIDQLVQSDFLKEIHFYLIHLNNDQRVIQEIKNKVNLIKCVNDLSKIIFHKAVVTQSINHSKSDHLKSCNAILTSIKKADVLVETCFICHKSDHSFKECFDQPTKINAVNNEYNRFKFNFNSNFNSKN |
| Ga0272439_100205325 | F005901 | N/A | LHSYILIYELLKHLEEIYEDQNKNRKCHCKYNALRQADKLFNIFYFNFMKLFSYLEYDDRTLMNDLQNKINNHLQNALLICLKDFITLHCLKSFLQSVNNRQRVNYQLQNERCMIIIKVIIASEKRATFLSAVMTLIIEYVKLTIFSTSESVRSSIVCYICKISDHLFKNCFQNKINTSASYAFTSHLHEIIISKNKKNEKMSFFKDNEAKN |
| Ga0272439_100205328 | F017767 | N/A | MKEMLISSTISMSDDSFASESLTTECVLSSNKISYSLKSLIDIEAADYSFID |
| Ga0272439_10020539 | F008169 | N/A | MFYEIXKTXSLALNEETDQLYELNKQQEDEIKELKTRLQAKENISSDFIYSERSRSQKIPDSSLFTDEKNFTXKNXYGKIQNKLEINVDLFSNEXVKLNYIHSRLFNDAAEITQARCERDYVNLYKIVDDLLKELAQLFDDSNKKVNFRRKYYNLIQEFKKFSEFYTQFQRLSFYLDYHEKQLIADLKDKIHFRLXFIXVDQLVQSDFLKEIHFYLIHLNNDQRVIQEIKNKIKRVNDLSKTIFHRATIVTQSINHLKSDQLKSRDAILTSVKEADILVESCFICHKSGHSSKECLNRSTRINAVNNKYDHFDFDSNFNSKN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |