NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272439_1002127

Scaffold Ga0272439_1002127


Overview

Basic Information
Taxon OID3300031471 Open in IMG/M
Scaffold IDGa0272439_1002127 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30796
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (22.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010214Metagenome306Y
F028367Metagenome191Y
F052973Metagenome141Y
F083460Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0272439_100212712F028367AGAAGLCKLDEILLKENYFEKSFLIDTHLISQNXTFSLCSLIDSDSVIYMIIHSNLVNKVCEKLRIQSILLTKEKLIKDYDEKIFKKIITHKILFNLIIKSHRKLTVSMLIADINHYEVILNKLXMNKNEILLNMRNDVIVFSNQLNTSISIFSILLNSKHSSXSXSSSLSLIFQTKVFMMLKQLIQKESFSI
Ga0272439_10021272F052973N/AMFRDCARLERNVFVTQEECDVNEQDVDERKECWERKRMLRHI
Ga0272439_100212731F010214GAGMRVSVLFNYDASSLLCSSLTIFYTTMFRFNSXFKDERCFLCTRDAHDCNVRRAVFFYSMIVIHXAEKYVMKERHTRXEDRVXLYXVILFFSXFDLCHVDVEXIVSIDVRSQSFDVXLXSMKENAFXSFSXALDFSCE
Ga0272439_10021277F083460N/AMKSSDSQAYSDALLELNASSIKYAMRCXLHKLLNHHLNHEESQGNSENDDENEAAEAV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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