NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272439_1002644

Scaffold Ga0272439_1002644


Overview

Basic Information
Taxon OID3300031471 Open in IMG/M
Scaffold IDGa0272439_1002644 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26769
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (16.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F008169Metagenome337Y
F033266Metagenome177Y
F066295Metagenome126Y
F086376Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272439_100264410F033266N/AMLSRSLTEECFEEFRNHFSQISDADSLKPQTKSSSAASFIHEDDESFAETIILLVFYEIXKARSLVLDKETDXLYELDKQQEDEIKELKTRL
Ga0272439_100264416F066295AGAAGLKTRLQAKENTSSDFIYSERSRSQKIPDSSLFTDEKNSTXKNXYGKIQNKLEINVDLFSNEXVKLSYIHSRLFDDAAEITQARRERDCVNLYKIINDLLKKLAQLFDDSNKKVNFRKEYYNLIQEFKKFNEFYT
Ga0272439_10026442F086376N/AMTRSTESKSVSIAHYDFQNVRRESLLSQNXAASEEEKDMNAMLNTEKKNMNVLFFIYKMIKISINEELNAXITANETDNIIIFIKYMLHQHDVEIKIHNDMIQILEDVNEINITLKIMQTCLQKENRNKNVVRIMPRASHRDTGKRRVNQVNEVNESKRE
Ga0272439_10026447F002432N/AMISFYFNKEFHSRMSFDSDTTDYETTHERLEARKADNIVIXMKELLSFDHQQLKKMKLIIEVQINKHRXNVIYEVDDXVXLSFKNVKTTRLCKDLKDKQLESYQITVKAKIFYHFRLLISMKHLHSMFSSKLLQSYSEDSLSEQHAEFFRFIIIDDDDNEHXKIDDILNFRRYQGQIQYKVKXKDLNRDNEXYYVDKDEFNDFEKVLNEFHALYSRKSR
Ga0272439_10026449F008169N/ALLFTDEKNLTXKNWYGKIQNKLEINVDLFSNERVKLSYIHSRLFDDAAEITQAKCEHDCVNLYKIIDDLLKELAQLFNDLNKKVNFRRKYYNLIQEFKKFNEFYTQFQRLSFYLDYHEKQLIADLKDKIHSRLXFIXVDQLVQPDSLKEIRFYLIHLNNDQRVIREIKNKIKHINDLFKTIFHKVTVVTQSVDHSKSDQLKLHDAVLTNVKKADILVESCFICHKSDHSSKECFDRSTRINAVNNEYDRFDFNSNFDSKN
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