NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272439_1002794

Scaffold Ga0272439_1002794


Overview

Basic Information
Taxon OID3300031471 Open in IMG/M
Scaffold IDGa0272439_1002794 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25786
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (10.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F003820Metagenome466Y
F008735Metagenome328Y
F086376Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272439_100279413F001951N/AMMTMIKFRFIDSSRNKRERDKNTVETTITKMMIFEFKELLVDAEIFLTLMNETMMKMKXD
Ga0272439_100279415F008735N/AMKEVMIIIHIHALYQTLLSCIQLIFVFLILKYVKKLLESKSSEDSDRVCKRVNNEKRLIIQDLCDDLSYHCKKLRIQLYIDXRIKNDEREXNDNIMLLNLILKFLHYAKDLDXIFNHTLSELFNSMLIIN
Ga0272439_100279417F086376N/ALLELRKFDRVTSESLNQQFSTHTMTRSTESKSVSITRYNFQNVKRELLLSQNXAASEEEKGMNAMLNTEEENMNALLFVYEMIKISINEKLNAXITANETDDIIIFIKYMLHQHDIEIEIHNNMIQMLEDINKINITLKITQTRLQKENKDKNVIIHHLKAASSX
Ga0272439_100279427F003820N/AMNNLQNKINNRLQNALSIYSENFTSLTRLRIFLQDVNNKQXVNYQLLSEHHTVIIKVTVISDKCITSLSVTTLIIDYVKLIISFIFKSVRSSIICYICKIFDHLFKNCSQNKIDTSASQTFILHLHEIIISKNKKNEKMSSFEDSKTKN
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