NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272439_1007841

Scaffold Ga0272439_1007841


Overview

Basic Information
Taxon OID3300031471 Open in IMG/M
Scaffold IDGa0272439_1007841 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12642
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019260Metagenome230Y
F079402Metagenome115Y
F104132Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0272439_10078411F079402N/AMRNKLKMNKNHFSIKEMKIAYVKSXVSETMIKHIALRMRDMITNLFLEAKEILSIINKMYDDLNXHHMT
Ga0272439_10078413F019260N/AMSQLENISNTLLSTFLVSINKLITVTQFQTHVNNALEAXYTFLIKLQTXFNNIITQYINXISVCQQEHKQTQIELKQFQINNEILSEMIQELKSISRINIKSEKYLNSELYIEEXKNKLNQFIFKLISKLKLNANHYSIFEFHLLYEYNRLSRNAVAQALSRMTAQHDKLVIIEQLVVLLRQAFDDSDKQEITQRFISVLRMQNRIFIEYLFNFQQHIDAIEYDVVTRKFNLKNKLFSELKALLIQVNVSSLNYEQLIIKCQQLNSRYHVTVQNLLKSKAVIHSISVISTVFAYLVKYATLSTDSEATILNSRNLMNLLIINMKKXDSLTLKKHQHRMINYLCLYCDKSEHQTAICNSKFKIQLQVISLLLRVCRNXIEFSSQ
Ga0272439_10078415F104132AGAAGMNEILNFRVKNSQLEYLIKXTEIEENSXVKFANVMNVIEVINVYHTXNLDCSSKNSXITYMQESSDSEYESEN
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