NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272439_1015487

Scaffold Ga0272439_1015487


Overview

Basic Information
Taxon OID3300031471 Open in IMG/M
Scaffold IDGa0272439_1015487 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7729
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F008735Metagenome328Y
F009580Metagenome315Y
F089602Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0272439_10154873F009580AGCAGMIEVRVKRLRLVDKMICIQISEHDLAQRLNFSCRQRDFFIYTDDVIVIDVHDTQSEELLIXAFFSNFARMLQLTVVAQLSLVADFLDLRNGQSLILNDDNDEA
Ga0272439_10154874F001951N/AMTMTKLRFIDSLKDEKERNEDTVETTVTEMMIFELQELLVNAEMFLTLTNETMTKMK
Ga0272439_10154875F089602N/AMKDEXLSFIKISSEEDNDLSEIIDIALQTVNQXEIFHQRMFFLLIEEIVVVSKAIYVLLQSFAKI
Ga0272439_10154876F008735N/AMKEVMIIVHVHALYQTLLSCIQSIFVSLILRYVEKLLESRSDEDSDRVCREMNDKKRLIVQDLCDDLSYHHKRLRIQFYINXRTENDEQEXSDDIMLLNLILKFTHCAKSLNXIFNHTLSELFNSMLIVDXKIVRXLHLSKRVTRRDFNVXKRCRKCRSFIMLKTRLN
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