NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272439_1019499

Scaffold Ga0272439_1019499


Overview

Basic Information
Taxon OID3300031471 Open in IMG/M
Scaffold IDGa0272439_1019499 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6560
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039410Metagenome163Y
F044226Metagenome154Y
F048017Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0272439_10194994F044226N/AMKFSDNSNIFLITSRILFYFNKEFHSRMSFDSDTMNYETTHERLEARKANDIVI
Ga0272439_10194996F048017N/AMKNKQLSXQQVNYLNILSKFNFQIIFKLDKMNTKVDALIRMSLMNISESAQRLEDHFQTILTLDRVDVLSIESKANLYQXVXMINQTDELCSEYKQAMKENKLKFHITKLKNCKIIDDVLFRKDLL
Ga0272439_10194998F039410N/AMNRAKTFILFFFEXFNSVLNEAVSMLQIENDFFXAVIEMSRLSIIEILVXMIEESEDDRDQLECFELREIEKIEIEVFNXFGKTMTSFHIFSNISFLFIQNLLNMTSXXSISAINIDTVNFLXLLMMRLSRILXVMIFLDIFPS
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