NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272439_1032999

Scaffold Ga0272439_1032999


Overview

Basic Information
Taxon OID3300031471 Open in IMG/M
Scaffold IDGa0272439_1032999 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4515
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005901Metagenome386Y
F007840Metagenome343Y
F024448Metagenome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0272439_10329991F024448N/AMKEMLIFSTMSMSDDSFASESLTTEYVLSSNEISYSLKSLIDIEAADYSFINEVIAQIVCDQLQIKSLTLIKAKSIREFDDHYAKKLITHAIYSNLTVQDHMIDTASMLIIRLDQHQMILEKTXMNKINLVIDMQIDSLRFSNFILNLKSIVLFTSNKTITKQKSLTSTYILKRSFTIFQLSLKSLSFSQFNEKSVKLIEQLKSRDATLTNVKNSKSTFS
Ga0272439_10329992F005901N/AMNDKLQTNVDHFDNENICIVYVISRLKDDTAEHIFAXHRHDASHSYISIYELFEHLKEIYDELNINXKCRRKYNALRQAEKSFNIFYFDFMKLFNYLKYDNRTLMNDFQNKINNRLQNALSVCSENFTSLTRLQIFLQDVNNKQRVNYQLRSQLRTVIVKVTVISDKCIATSLSMTTLIIDYVKSTLSSISELAKSFIICYTCKISSHLFKNCSQNKIDTSASYAFIFRLHEIVISKNKKNEKMSSFEDSEAKN
Ga0272439_10329994F007840N/AMINAIERQNNTRKSIESTARLIELLEDLQLIKYTSFISINRISDKESSLIARESNRSRESINS
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