NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272439_1054579

Scaffold Ga0272439_1054579


Overview

Basic Information
Taxon OID3300031471 Open in IMG/M
Scaffold IDGa0272439_1054579 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3077
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F059496Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0272439_10545793F002432N/AMQNDXVKXISMMKFSDNFNIFLITSMILFYFNKEFHSRMSFDSNMTDYETTREXLEARKTDNIVIXMKELLSFDHQQLKKTKLIIEVQINKHRXDVTYKVNDXVXLSFRNIKTTRLCKDLKDKQLDLYQITAKIDIFYHLHLSVSMKHLHSIFSSKLLQSYSKDSLSEQHSESLRLITIEDDEHXKIDDILNFRRYQDQIQYKVKXKDLDKDDEXYYVNKEKFNDSEKVLNEFHKLYSSKSR
Ga0272439_10545794F059496N/ATINEDQSXQCLIFRNNYNXILRIQKKIDTKASIYVMFRDCARLKKDVFVTXKENDVNEQDVDERKEC
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