NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272439_1079150

Scaffold Ga0272439_1079150


Overview

Basic Information
Taxon OID3300031471 Open in IMG/M
Scaffold IDGa0272439_1079150 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2247
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008169Metagenome337Y
F028367Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0272439_10791502F008169N/AVFYEIXKARSLALDKETDQLYELNKQQEDEIKELKTRLQTKENTSSDFIYSERSRSQKIPDSSLFTDEKNSTXKNXYGKIQNKLEINVDLFSNERVKLSYVHSRLFNDAAEITQARCEHDCVNLYRIVKDFLKELAQLFNDLNKKVNFCRKYYNLIQESKKFSEFYTQFQRLSFYLDYHEKQLIIDLKDKIHSHLXFIXVDQLVQSDFLKEICFYLIYLNNDQRVIREIKNKLKRVDDVSKTIFHKATVITQSVDHSKFDHLKLRDAILTSVKEADILVESCFVCHKSDHSSKKCFDXLTKISAVNQEYDRFDFNSNFDSKN
Ga0272439_10791503F028367GAGLCKLDEILLKENYFEKSFLINTHLIFQKXSFSLRFLINSDSVIYMIIHFNLVNKVCKKLRIQSIFLTKEKLIKDYDEKIFKKTITHKILLNLIIESHKKLTVSMLIADIDHHEVILSKFXMNKNEILLNMXNDVIVFLNQLNTFISIFSISLNSKHSSXLQSTSFFSITQTKISTMLKXLVSITAQKESFSIQS
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