NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272439_1109381

Scaffold Ga0272439_1109381


Overview

Basic Information
Taxon OID3300031471 Open in IMG/M
Scaffold IDGa0272439_1109381 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1659
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008169Metagenome337Y
F028367Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0272439_11093811F028367N/ALLXFQFEFRFKKLVISSKVIEKIEIISLCKLDEILLKENYFEKLFLIDAHLISQSQSFSLHSLIDSDSVVYMIIHFNLVDKVCEKLKIQSISLTKEKLIKDYDEKIFKKTIITHKILLNLIIKSHKKLTVSMLIVDINYHEVILSKLXMNKNEILLNMXNDVIVFSNQLNTSISIFXILLNSKHLSXSQSTSLSSITQTKIFMMLKQLISITAQKELFSIQSINITSFKTLLNYS
Ga0272439_11093812F008169N/AAETIIFFMFYKIXKTRSLALDQETDXLYELNKQQEDEIKELKIRLQAKENTSSDFIYSERSRSQKIPDSSLFTDEKNFTXKNXYEKIQNKLEINIDLFSNEXVKLNYIHSRLFDDAAEITQARCERDCVNLYKIVDNLLKELTQLFNDSNKKVNFHKEYYNFIQEFKKFNEFYTQFQHLSFYLDYHEKQLIIDLKDKINFRLXFIXVNQLVQSDSLKEIHFYLIHLNNDQRVIQEIKNKLKRVDDFSKTIFYKVTVVTQSVNHLKFEQLKLHDAILTNVKEADILFKSCFICHKSNHNSKKCFNRSTKINAVNKEYDCFDFNSNFDSKN
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