NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272437_1002268

Scaffold Ga0272437_1002268


Overview

Basic Information
Taxon OID3300031472 Open in IMG/M
Scaffold IDGa0272437_1002268 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak red sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27351
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (73.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)159.06Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009446Metagenome317Y
F076667Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0272437_100226823F009446AGGGGGVSDLGEDLARAYEARVAAVDVELTPAAIRAVVWDLGGGEGRAQVAAGNKQLAGQLGISVRTVQRWQKEGGEARSVARSTPGLRISVRGIATAQQRQANARAFRERVQEQGLDVGACRVMVLVYNEDRARPRSIGDMHIAGTNEGLIDALDALEDGDIAAAAKAFGNAWLGTYGIDVDAEVTDVVGIFQVDL
Ga0272437_100226825F076667N/ALRISERGIATAQQQQANARAFRERVQEQGLDVAPCRVMVKVYDEDRPQARNIGPQHIGGDALTEVLDALEAGDAAGAAKAFVAAWPEAYGMDAVNATITDVVGAFTLR
Ga0272437_10022688F009446AGGGGGVSDLGEDLARAYEARVAAADVELTPTAIRAVVRELGGGEGRAQVAAGNKELAGQLGISVRTVQRWQKEGGEARSVARSTPGLRISVRGIAMAQQRAANARAFRERVQEQGLDVGACRVMVKAYNEDRARPRNIGAQHIEGDALTVALDALEGGDVAGAAEAFGRAWLETYGMDVEAEVTDVVGTLVVSLEPV
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