NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272437_1002442

Scaffold Ga0272437_1002442


Overview

Basic Information
Taxon OID3300031472 Open in IMG/M
Scaffold IDGa0272437_1002442 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak red sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26210
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (89.74%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)159.06Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035137Metagenome172Y
F075492Metagenome118Y
F078022Metagenome116Y
F094623Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272437_100244234F078022AGGAMVDGDYITLVEASKLAGLQSSDSLHAAARTGRLKTVTTAAGPRPMRRTTRAWLQEYLDSQHRNTSGRGHTPEVTSVD
Ga0272437_100244235F075492AGGMSNHPDPTDTTGRLGADNTTVDEILAVVTAEEPRGATADQITIAIGLGFDGTLLRDTLEELVDRGLLNQFGIGHGAVYTLNPRT
Ga0272437_10024425F094623GAGMIYWIERSPYLHEARLTTADGADLYAGYVAVSPGYDDWRGYVGRGFVPLGMGPRRVMQAAVERRVREILAHGEDLHHAS
Ga0272437_10024428F035137GAGGMRGRWARKSAALWTYRLAGAARPYGYVGQYKDVGRSSSAWDATVTAERLDDDTTIAERVSFNEARAAIERHAATHDHG
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