NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272437_1007041

Scaffold Ga0272437_1007041


Overview

Basic Information
Taxon OID3300031472 Open in IMG/M
Scaffold IDGa0272437_1007041 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak red sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13245
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)159.06Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016760Metagenome244Y
F074200Metagenome119Y
F102178Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272437_100704110F102178GGAGMAHATPPTPRAVIPARACALVGTALRVTYPYLLGGGVGYLALTVVSRDIALMFAGALLVLYGAALSKALQGQGPSGAHERGTDGT
Ga0272437_100704111F074200AGGGGGMARNAQTALYINDPVKIVAGVFTVRQAIYVAGIVLLTYGLINATGRLPYGQSGLGQLHLLLIVGVPALLALLVVTFAGSGTVEPYARQLTGYLWRTTLALPRRLAYRAATLARRPRTPRVYGPVLVAAEAGAAPVAERAPVATPIRALPAPYVAPVLMTTPVAQTQRARLLAWLTAHPCVTDEEIAEGAGMNPSAARPRRRELVEAGVVRKVDLDGRTRAGRRAARWAVVETPGGVAHG
Ga0272437_100704115F016760GGGGGMRVPSGIKRAARATGRGLFVLAVPKTVRRSTDELRSVEMSPALGLVLRLTALLVLAGTVLAVHAVGHPLLGLARDALLLVGAVVILALSGALAPQGRLVGRLLLSYAKRESARRGLTWRGRLYRALARRLEPVTSEKEKGTINGR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.