NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272437_1066599

Scaffold Ga0272437_1066599


Overview

Basic Information
Taxon OID3300031472 Open in IMG/M
Scaffold IDGa0272437_1066599 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak red sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2780
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)159.06Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042663Metagenome157Y
F058564Metagenome134Y
F074201Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272437_10665992F042663AGGAMTSQIIPVTHVAASIPSIPPRSAVALYDGDISVTATFRPHDPLGATEVVASLDLPDDTALLNLLDATIARLTAYRDAYQQAMTEDADPAPVRAPLPLHVPWYAW
Ga0272437_10665994F058564AGGAGMTTMTTMTTMTPAPTPEWHEIATDGVAHAHDGQGRAADMTPIHAGDLDDSAPCADCGQPLAAPADASIVWTCPYCGSADLRVLYDERRACRVTTLNDTGDPADAEPWPSYAGDECVDIAPGSFAFHCDACNTHDITPHKGGQTNGLGHQQAA
Ga0272437_10665996F074201AGGAGGMDTVDITPTPEACRQIARLFRARPADAEALAARAAQALDALDTTDDDALAPWGRDLLAVAFAALYEVEGARVSKMREGLEALGPYADNGKGSDDAP
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