NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272437_1125251

Scaffold Ga0272437_1125251


Overview

Basic Information
Taxon OID3300031472 Open in IMG/M
Scaffold IDGa0272437_1125251 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak red sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1615
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)159.06Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034417Metagenome174Y
F058564Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0272437_11252512F034417AGGAGMPWAVTKPRSTWLAQATDAWAALAPQASQGAHLRALAAIDHDNFARLIEALAALTPGEVSQELQDLAGLRPVGEILGMLDRGDVDDAGDIGEW
Ga0272437_11252513F058564AGGAGMTPIGYAMIGHPLCLPCVDGDDRRDPDGTIYAHNGRAIGDDVAPIHARDPDDGAPCAGCGLPLAAALEAAVVWTCPECGSADLRAFYSERRTCHVGARDDTGDPADAAPWPTYENDEFVDIDPALFAFACDAYNAHDITPCTEGDTHALGRDQAA
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