NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272437_1220901

Scaffold Ga0272437_1220901


Overview

Basic Information
Taxon OID3300031472 Open in IMG/M
Scaffold IDGa0272437_1220901 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak red sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)973
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)159.06Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075492Metagenome118Y
F078022Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0272437_12209012F075492AGGMAKHPDPTRSTGGSRADDTTTDEILAVIAVEEPRGATADQVALAIGLGFDGTVVQDTLEELVEQGVLDRIGIGHGAVYTLSAIA
Ga0272437_12209013F078022N/AIVDSDYLTLAQASRLAGLQTSGALYRAAQTGRLTTVTTMVGPRSVRLTTQAWLHAYLDGQRRAT

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