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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031473 Open in IMG/M |
| Scaffold ID | Ga0272434_1000017 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 350738 |
| Total Scaffold Genes | 411 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 206 (50.12%) |
| Novel Protein Genes | 13 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (15.38%) |
| Associated Families | 12 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.5 | Long. (o) | 159.59 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003820 | Metagenome | 466 | Y |
| F006206 | Metagenome | 378 | Y |
| F008668 | Metagenome | 329 | Y |
| F013598 | Metagenome | 269 | Y |
| F021896 | Metagenome | 216 | Y |
| F037508 | Metagenome | 167 | Y |
| F041516 | Metagenome | 159 | Y |
| F058565 | Metagenome | 134 | Y |
| F069514 | Metagenome | 123 | Y |
| F071806 | Metagenome | 121 | Y |
| F094626 | Metagenome | 105 | Y |
| F096306 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272434_1000017226 | F041516 | N/A | MIQKVIHIHEAYNLSLKDYKIIHEKENLSNIKRMLHMSKESIFVKDFNLHHFT |
| Ga0272434_1000017229 | F037508 | N/A | VIFRLEDDADQQIYAKHHVDAFSFYQSLSELLKHLKEIYEDQNLIRKCHHKYVTLKQLNKFFNSFYSEFTRIFSFLNYDDVILTNNIQNKINNHLQNALSVYFIKFSSLDKLKIFLQDVNNK |
| Ga0272434_1000017234 | F013598 | N/A | MNFIINLFNSSEYNVILTIICRLLKKRHYISCIIDDEDITVKKTAEMLIQ |
| Ga0272434_1000017243 | F003820 | N/A | MKLFNYLDYENCTLINNLQNKINNRLQDTLLIYLKDFITLHRLKSFLQNVNNRQRVNYQLRSERCMIIVKVIIASEKCITSLSAVTTSIIKYVKSIIFSISESVRLSIICYICKISDYLFKNCFQNKINTSAFYVFIFRLHEIVILKNKENEKMSCKNNKTKN |
| Ga0272434_1000017247 | F071806 | N/A | MKLQSQIIILNSVQLHLFSVISTSLQILTLMNLEIEEFNIKDVKSQLNQDILNLDEDSADIFIQTL |
| Ga0272434_1000017248 | F021896 | N/A | MMKNNFKSEDFLKNVKCNLTFLKSDKKYIFSDETSERDSYSTIVIDESSIKVREI |
| Ga0272434_1000017250 | F096306 | N/A | MFAMYNNCAVDSLINDNDSNKERSCRNNSELQASIILFNIVTLIATNVKIVFVESNDI |
| Ga0272434_1000017253 | F006206 | N/A | LCKLDEILSKENYFEKSFLIDAHFILQNQFFSLRLLINSDSVAHTLIHANLVNRVCEKLEIQSISLTKEKLIRDYDEKISKKIITHKILLNLIIENHKKLTVSMLIADIDHHEVILSKL |
| Ga0272434_1000017258 | F008668 | N/A | MSFNSDTTDYEITHERLKVRKADDIVIQMKELLSFNHQQLKKTKLIIKAQINKHK |
| Ga0272434_1000017259 | F058565 | AGAAG | MNCMNCSSADSKTIASNVDSLQENRDARSKHSHDDEENVANIIDLLIKISTLEKEKSKDH |
| Ga0272434_1000017292 | F071806 | N/A | MKLQSQIIILDSVQLHLFSIISASLQILTFMNLEIEEFNVENIKSQLNQDTLNLDEDSADILTQTL |
| Ga0272434_1000017312 | F069514 | GAG | MIEFVNNNALFSVIFLTSFFLNKDFHSHISFEFNVIEYESSHESLQMTKVENISEHMNKTLKFARKSLVKT |
| Ga0272434_1000017313 | F094626 | N/A | MKQVNKHKKEVNYEIESKMFLNERNIVTAKSFKKLNDKMLDSFINLNFINSSYKLKLSESMHVYDVFHSDLLRSVINDFLSDQKNEFLDLIMINNENE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |