NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1000043

Scaffold Ga0272434_1000043


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1000043 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)264014
Total Scaffold Genes202 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)112 (55.45%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007459Metagenome350Y
F015284Metagenome255Y
F015552Metagenome253Y
F020636Metagenome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_1000043184F020636N/AMFRRNLKNNLKNEIMRDEKILNNIFDLIEIIINFDDKLYEKTIKKNTINLKKE
Ga0272434_1000043185F007459N/AMYFSCFAINFSLHTIICKYLISLLIITSIELYLSSIIKFVDFDNLIIKFIVTSFHNDLNN
Ga0272434_1000043186F015552N/AMTQLALNAKVSNIIKITSFFANYNKKLNLFKEERTHLLAQLIIEKVATLKKIHDNILKMQERSIKY
Ga0272434_1000043195F015284N/AMNNNKLLLINKYKLSIIFQIFRDNTKEFLIKKEKLQIFINKIDKYVKKYYSKLLQKYLKVTKTF
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